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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
45
ChIP-seq
28
ATAC-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
68
Transcription
45
DNA binding
31
DNA accessibility
1
3D chromatin structure
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
6
control
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
109
fastq
86
bam
80
bigWig
53
bed narrowPeak
26
tsv
21
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
145
Homo sapiens
Biosample type
109
primary cell
21
tissue
16
cell line
Organ
148
epithelium
146
pancreas
87
brain
82
blood vessel
82
vasculature
69
limb
61
artery
52
eye
44
heart
42
nerve
30
kidney
21
vein
18
connective tissue
8
bone element
8
skeleton
7
liver
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
91
AMP
37
HPAP
18
T1D
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
91
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Audit category:
32
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
146 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
37
3
pancreatic beta cell
20
4
pancreatic ductal cell
4
13
4
pancreatic acinar cell
2
8
3
pancreatic endocrine cell
11
tissue
islet of Langerhans
5
14
2
cell line
Panc1
13
1
1
EndoC_BH1
1
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