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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
32
ChIP-seq
25
ATAC-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
68
Transcription
32
DNA binding
27
DNA accessibility
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
109
fastq
72
bam
72
bigWig
46
bed narrowPeak
26
tsv
14
bigBed narrowPeak
Organism
127
Homo sapiens
Biosample type
109
primary cell
18
tissue
1
cell line
Organ
128
pancreas
113
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
73
AMP
37
HPAP
18
T1D
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
73
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Audit category:
32
missing controlled_by
month_released!
February, 2021
organ_slims!
blood
BIOSAMPLE
ASSAY
128 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
37
3
pancreatic beta cell
20
4
pancreatic ductal cell
4
13
4
pancreatic acinar cell
2
8
3
pancreatic endocrine cell
11
tissue
islet of Langerhans
5
11
2
cell line
EndoC_BH1
1
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