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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ATAC-seq
  • 89total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 95DNA accessibility
  • 90Transcription
Date released
  • 406November, 2017
  • 397May, 2021
  • 341May, 2020
  • 314August, 2021
  • 310October, 2019
  • 286August, 2017
  • 260February, 2021
  • 200June, 2019
  • 200May, 2022
  • 191February, 2023
  • 166July, 2018
  • 120May, 2019
  • 94December, 2017
  • 90July, 2019
  • 87November, 2018
  • 80April, 2019
  • 73September, 2018
  • 62March, 2020
  • 60November, 2019
  • 59September, 2020
  • 53October, 2018
  • 47April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 23February, 2020
  • 22October, 2017
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 76fastq
  • 64bed narrowPeak
  • 16tsv
  • 7txt
  • 5bed bed3
  • 3bed bedgraph
  • 3bigWig
Organism
  • 190Homo sapiens
Biosample type
  • 94tissue
  • 88primary cell
  • 6cell line
  • 3in vitro differentiated cells
Organ
  • 56pancreas
  • 52epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
Project
  • 92AMP
  • 76HPAP
  • 23T1D
Genome assembly (visualization)
  • 35GRCh38
  • 35hg19
Lab
  • 89AMP-T2D consortium
  • 76Klaus Kaestner, Upenn
  • 23Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 7inconsistent ontology term
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

191 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery35
islet of Langerhans1152
retina152
pigmented layer of retina122
acetabular part of hip bone11
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
cell line
EndoC_BH1321
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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