Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 91ATAC-seq
  • 54total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1single cell RNA-seq
Assay category
  • 93DNA accessibility
  • 55Transcription
Date released
  • 683February, 2021
  • 400November, 2017
  • 382August, 2017
  • 373May, 2021
  • 341May, 2020
  • 313August, 2021
  • 279October, 2019
  • 198June, 2019
  • 153February, 2023
  • 135July, 2018
  • 120May, 2022
  • 115May, 2019
  • 95July, 2019
  • 88November, 2018
  • 80April, 2019
  • 75December, 2017
  • 74October, 2018
  • 58March, 2020
  • 47September, 2023
  • 45November, 2019
  • 40May, 2024
  • 40September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16April, 2018
  • 16January, 2021
  • 15May, 2023
  • 12September, 2018
  • 10November, 2020
  • 8January, 2018
  • 6September, 2017
  • 5March, 2019
  • 5March, 2023
  • 4December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1July, 2025
  • 1October, 2022
Available data
  • 53bed narrowPeak
  • 39fastq
  • 14tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 153Homo sapiens
Biosample type
  • 81tissue
  • 51primary cell
  • 16in vitro differentiated cells
  • 5cell line
Organ
  • 56pancreas
  • epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
Project
  • 91AMP
  • 39HPAP
  • 23T1D
Genome assembly (visualization)
  • 35GRCh38
  • 33hg19
Lab
  • 88AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
  • 23Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

153 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
single cell RNA-seq
tissue
coronary artery35
islet of Langerhans1152
retina152
acetabular part of hip bone11
ilium11
primary cell
exocrine cell39
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH132
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego