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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92ATAC-seq
  • 51total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1single cell RNA-seq
Assay category
  • 92DNA accessibility
  • 52Transcription
Date released
  • 683February, 2021
  • 406November, 2017
  • 341May, 2020
  • 338May, 2021
  • 315August, 2021
  • 296October, 2019
  • 223August, 2017
  • 214June, 2019
  • 149February, 2023
  • 118May, 2019
  • 102July, 2019
  • 96May, 2022
  • 94December, 2017
  • 81November, 2018
  • 80April, 2019
  • 50March, 2020
  • 47September, 2023
  • 40May, 2024
  • 40September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24February, 2020
  • 23October, 2018
  • 19April, 2020
  • 18October, 2017
  • 15May, 2023
  • 11July, 2018
  • 10April, 2018
  • 10December, 2019
  • 8January, 2018
  • 8January, 2021
  • 6November, 2019
  • 6November, 2020
  • 5March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1July, 2025
  • 1October, 2022
  • 1September, 2018
Available data
  • 65bed narrowPeak
  • 39fastq
  • 16tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 149Homo sapiens
Biosample type
  • 77tissue
  • 51primary cell
  • 16in vitro differentiated cells
  • 5cell line
Organ
  • pancreas
  • 52epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
Project
  • 105AMP
  • 39HPAP
  • 5T1D
Genome assembly (visualization)
  • 45hg19
  • 35GRCh38
Lab
  • 102AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
  • 5Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

149 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
single cell RNA-seq
tissue
coronary artery35
retina152
pigmented layer of retina122
acetabular part of hip bone11
ilium11
primary cell
exocrine cell39
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH132
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