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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
total RNA-seq
22
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
43
Transcription
22
DNA accessibility
Date released
487
February, 2021
154
August, 2017
80
May, 2022
66
February, 2023
61
September, 2018
39
October, 2019
38
June, 2019
35
April, 2018
35
July, 2018
31
July, 2019
28
May, 2021
25
October, 2018
19
December, 2017
19
September, 2020
17
November, 2019
12
November, 2020
11
August, 2021
8
March, 2020
7
August, 2020
6
December, 2019
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2018
3
October, 2022
2
February, 2020
1
January, 2018
1
June, 2018
1
May, 2023
1
November, 2018
1
October, 2017
Available data
37
fastq
13
bed narrowPeak
5
bed bed3
4
bed bed3+
2
tsv
Organism
65
Homo sapiens
Biosample type
37
primary cell
15
tissue
13
in vitro differentiated cells
1
cell line
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
37
HPAP
29
AMP
Genome assembly (visualization)
22
hg19
Lab
37
Klaus Kaestner, Upenn
29
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
mammary gland
spinal cord
BIOSAMPLE
ASSAY
66 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
pigmented layer of retina
2
12
adipose tissue
1
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
1
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