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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 103ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 105DNA accessibility
Date released
  • 406November, 2017
  • 322August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 134August, 2021
  • 120May, 2019
  • 111February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 10April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 65bed narrowPeak
  • 12tsv
  • 10bed bed3
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
  • 3txt
Organism
  • 110Homo sapiens
Biosample type
  • 81tissue
  • 12in vitro differentiated cells
  • 12primary cell
  • 6cell line
Organ
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 27eye
  • 14pancreas
  • 13epithelium
  • 10connective tissue
  • 4bone element
  • 4skeleton
  • 1adipose tissue
  • 1brain
Project
  • 93AMP
  • 18T1D
Genome assembly (visualization)
  • 45hg19
  • 35GRCh38
Lab
  • 90AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 9inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

111 results

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Clear Filters
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
coronary artery35
retina15
islet of Langerhans112
pigmented layer of retina12
acetabular part of hip bone1
in vitro differentiated cells
chondrocyte5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
adipocyte1
embryonic stem cell1
primary cell
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
cell line
EndoC_BH1321
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