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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81total RNA-seq
  • 71ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 81Transcription
  • 71DNA accessibility
Date released
  • 704February, 2021
  • 406November, 2017
  • 378August, 2017
  • 271August, 2021
  • 265May, 2021
  • 264October, 2019
  • 253May, 2020
  • 198May, 2022
  • 188June, 2019
  • 158February, 2023
  • 124July, 2018
  • 120May, 2019
  • 91December, 2017
  • 86November, 2018
  • 79April, 2019
  • 75October, 2018
  • 72July, 2019
  • 72September, 2018
  • 60November, 2019
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 35December, 2018
  • 32March, 2020
  • 30January, 2019
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 14January, 2021
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 4March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 76fastq
  • 64bed narrowPeak
  • 5bed bed3
  • 4tsv
  • 3bed bedgraph
  • 3bigWig
  • 3txt
  • 1bed bed3+
Organism
  • 157Homo sapiens
Biosample type
  • 76primary cell
  • 66tissue
  • 10in vitro differentiated cells
  • 6cell line
Organ
  • 52epithelium
  • 38pancreas
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 31eye
  • 7connective tissue
Project
  • 77AMP
  • 76HPAP
  • 5T1D
Genome assembly (visualization)
  • 36hg19
  • 35GRCh38
Lab
  • 76Klaus Kaestner, Upenn
  • 74AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

158 results

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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
tissue
coronary artery35
retina215
pigmented layer of retina212
in vitro differentiated cells
chondrocyte5
immature adipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
EndoC_BH1321
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