Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81total RNA-seq
  • 68ATAC-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 81Transcription
  • 68DNA accessibility
Date released
  • 672February, 2021
  • 355August, 2017
  • 253August, 2021
  • 251May, 2021
  • 198May, 2022
  • 197May, 2020
  • 190October, 2019
  • 156June, 2019
  • 152February, 2023
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 19April, 2020
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 6November, 2020
  • 4March, 2023
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 76fastq
  • 62bed narrowPeak
  • 5bed bed3
  • 4tsv
  • 1bed bed3+
Organism
  • 151Homo sapiens
Biosample type
  • 76primary cell
  • 66tissue
  • 7in vitro differentiated cells
  • 3cell line
Organ
  • 52epithelium
  • 38pancreas
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 31eye
  • 7connective tissue
Project
  • 76HPAP
  • 74AMP
  • 2T1D
Genome assembly (visualization)
  • 35GRCh38
  • 33hg19
Lab
  • 76Klaus Kaestner, Upenn
  • 74AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

152 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
tissue
coronary artery35
retina215
pigmented layer of retina212
in vitro differentiated cells
chondrocyte5
immature adipocyte11
cell line
EndoC_BH121
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego