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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
48
single cell RNA-seq
5
GRO-seq
3
ATAC-seq
3
Hi-C
1
MPRA
Assay category
168
Transcription
3
3D chromatin structure
3
DNA accessibility
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
bigWig
164
bam
164
tsv
55
fastq
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
179
Homo sapiens
Biosample type
122
tissue
51
primary cell
4
in vitro differentiated cells
2
cell line
1
stem cell
Organ
160
pancreas
36
epithelium
3
connective tissue
1
adipose tissue
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
177
AMP
3
HPAP
Genome assembly (visualization)
170
hg19
164
GRCh38
5
hg18
Lab
177
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
month_released!
April, 2019
September, 2020
BIOSAMPLE
ASSAY
180 results
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total RNA-seq
single cell RNA-seq
GRO-seq
ATAC-seq
Hi-C
MPRA
tissue
islet of Langerhans
120
adipose tissue
1
skeletal muscle tissue
1
primary cell
pancreatic beta cell
9
1
pancreatic alpha cell
7
1
pancreatic acinar cell
5
1
pancreatic delta cell
4
pancreatic cell
3
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in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
GM12878
1
MIN6
1
stem cell
hESC
1
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