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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
8
ATAC-seq
5
GRO-seq
4
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
9
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
13
bigWig
7
bam
6
fastq
4
tsv
2
bed broadPeak
2
bed narrowPeak
1
bed bed3+
1
bedpe
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
29
Homo sapiens
Biosample type
11
tissue
7
cell line
6
primary cell
4
in vitro differentiated cells
1
stem cell
Organ
15
pancreas
7
connective tissue
6
epithelium
1
adipose tissue
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
29
AMP
Genome assembly (visualization)
12
hg19
8
GRCh38
5
hg18
Lab
14
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
month_released!
August, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
29 results
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Clear Filters
MeRIP-seq
ATAC-seq
GRO-seq
total RNA-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
4
4
1
adipose tissue
1
skeletal muscle tissue
1
cell line
EndoC_BH1
6
GM12878
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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