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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
51
single cell RNA-seq
25
ChIP-seq
16
small RNA-seq
14
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
2
FAIRE-seq
Assay category
234
Transcription
25
DNA binding
25
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
271
bam
270
bigWig
230
tsv
80
fastq
28
bed narrowPeak
23
bigBed narrowPeak
21
bed bedMethyl
21
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
296
Homo sapiens
Biosample type
197
tissue
76
primary cell
23
cell line
Organ
163
pancreas
46
epithelium
25
heart
20
connective tissue
18
blood
18
bodily fluid
18
brain
15
liver
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
musculature of body
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
296
AMP
Genome assembly (visualization)
276
hg19
264
GRCh38
Lab
296
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
June, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
296 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 24 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 33 more…
cell line
GM12878
18
HepG2
5
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