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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
DNase-seq
151
total RNA-seq
82
single cell RNA-seq
77
ATAC-seq
51
ChIP-seq
41
WGBS
22
snATAC-seq
Assay category
256
DNA accessibility
233
Transcription
51
DNA binding
41
DNA methylation
Target of assay
24
histone
24
histone modification
17
transcription factor
12
broad histone mark
12
narrow histone mark
10
control
9
RNA binding protein
6
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
401
bam
387
bigWig
236
bed narrowPeak
198
bigBed narrowPeak
169
tsv
158
bed bed3+
157
bed broadPeak
157
bigBed broadPeak
134
zippedFastqFolder
104
fastq
7
txt
Organism
581
Homo sapiens
Biosample type
329
tissue
229
primary cell
23
cell line
Organ
265
pancreas
133
epithelium
81
kidney
47
liver
45
musculature of body
heart
32
limb
30
brain
20
connective tissue
18
blood
18
bodily fluid
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
447
AMP
134
HPAP
Genome assembly (visualization)
386
hg19
367
GRCh38
Lab
383
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent ontology term
1
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
581 results
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Clear Filters
DNase-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
tissue
islet of Langerhans
126
18
liver
20
20
muscle of arm
17
kidney
13
muscle of leg
13
+ See 32 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
7
22
25
pancreatic beta cell
9
13
16
pancreatic acinar cell
5
4
skeletal muscle satellite cell
8
+ See 32 more…
cell line
GM12878
18
HepG2
5
See all biosamples
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