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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
132
ChIP-seq
100
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
196
Transcription
132
DNA binding
110
DNA accessibility
7
DNA methylation
Target of assay
78
transcription factor
34
histone
34
histone modification
33
control
30
narrow histone mark
27
RNA binding protein
16
recombinant protein
chromatin remodeller
4
broad histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
387
bam
353
bigWig
194
tsv
108
bed narrowPeak
105
fastq
81
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
446
Homo sapiens
Biosample type
226
tissue
148
primary cell
72
cell line
Organ
247
liver
25
blood
25
bodily fluid
16
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
401
AMP
45
T1D
Genome assembly (visualization)
344
hg19
299
GRCh38
Lab
401
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
446 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
2
spleen
13
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
5
40
1
1
GM12878
25
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