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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
total RNA-seq
22
snATAC-seq
21
ChIP-seq
Assay category
107
DNA accessibility
65
Transcription
41
DNA methylation
21
DNA binding
Target of assay
histone
19
histone modification
14
broad histone mark
14
transcription factor
7
control
6
RNA binding protein
6
chromatin remodeller
5
narrow histone mark
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
58
bed narrowPeak
57
fastq
56
bam
47
bigWig
14
bigBed narrowPeak
7
txt
5
tsv
2
tagAlign
1
bed bed3+
1
bed broadPeak
Organism
234
Homo sapiens
Biosample type
134
primary cell
78
tissue
22
cell line
Organ
109
pancreas
80
epithelium
45
liver
17
blood
17
bodily fluid
4
brain
2
musculature of body
2
spleen
1
adipose tissue
1
connective tissue
Project
134
HPAP
100
AMP
Genome assembly (visualization)
65
hg19
27
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
35
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
month_released!
December, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
19
6
body of pancreas
4
brain
3
skeletal muscle tissue
1
1
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cell line
GM12878
17
HepG2
5
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