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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
total RNA-seq
22
snATAC-seq
7
ChIP-seq
Assay category
99
DNA accessibility
65
Transcription
41
DNA methylation
7
DNA binding
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
23
October, 2017
22
February, 2020
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
44
bed narrowPeak
36
bam
36
fastq
31
bigWig
7
txt
6
bigBed narrowPeak
5
tsv
1
bed bed3+
Organism
212
Homo sapiens
Biosample type
134
primary cell
73
tissue
5
cell line
Organ
104
pancreas
80
epithelium
45
liver
18
blood
bodily fluid
7
spleen
2
musculature of body
Project
134
HPAP
78
AMP
Genome assembly (visualization)
50
hg19
11
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
14
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
blood vessel
bodily fluid
vasculature
BIOSAMPLE
ASSAY
212 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
cell line
HepG2
5
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