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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
5
total RNA-seq
Assay category
390
DNA binding
5
Transcription
Target of assay
258
transcription factor
95
histone
95
histone modification
75
control
66
recombinant protein
54
broad histone mark
43
RNA binding protein
narrow histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
205
February, 2023
200
May, 2022
189
June, 2019
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
390
bam
341
fastq
327
bigWig
302
bed narrowPeak
302
bigBed narrowPeak
57
bed broadPeak
55
bigBed broadPeak
52
tagAlign
5
tsv
3
tar
Organism
395
Homo sapiens
Biosample type
330
cell line
59
tissue
6
primary cell
Organ
313
liver
60
brain
17
blood
17
bodily fluid
5
spleen
4
epithelium
4
vasculature
2
blood vessel
Project
395
AMP
Genome assembly (visualization)
290
hg19
275
GRCh38
Lab
395
AMP-T2D consortium
Audit category:
9
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
organ_slims!
ureter
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
395 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
308
5
GM12878
17
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
middle frontal area 46
9
+ See 2 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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