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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
31
total RNA-seq
22
ATAC-seq
1
single cell RNA-seq
Assay category
72
DNA binding
32
Transcription
22
DNA accessibility
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
14
transcription factor
7
control
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
120
fastq
117
bam
112
bigWig
79
bed narrowPeak
41
bigBed narrowPeak
31
tsv
14
tagAlign
4
bed broadPeak
1
csv
Organism
126
Homo sapiens
Biosample type
73
primary cell
30
tissue
23
cell line
Organ
77
pancreas
61
epithelium
18
blood
18
bodily fluid
16
brain
8
spleen
5
liver
1
adipose tissue
1
connective tissue
Project
126
AMP
Genome assembly (visualization)
112
GRCh38
111
hg19
Lab
125
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
36
missing controlled_by
month_released!
August, 2017
February, 2020
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
tissue
brain
15
spleen
7
1
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 1 more…
cell line
GM12878
18
HepG2
5
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