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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
121
Transcription
120
DNA binding
27
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
202
bam
185
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
65
tsv
41
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
4
bed bed3+
4
hdf5
Organism
303
Homo sapiens
Biosample type
200
tissue
103
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
37
epithelium
35
pancreas
18
connective tissue
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
8
blood
8
bodily fluid
2
pericardium
1
eye
Project
228
AMP
59
HPAP
16
T1D
Genome assembly (visualization)
188
hg19
178
GRCh38
Lab
228
AMP-T2D consortium
59
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 28 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
peripheral blood mononuclear cell
8
kidney epithelial cell
5
1
1
cerebellar granule cell
2
+ See 24 more…
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