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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
16
snATAC-seq
15
small RNA-seq
14
RRBS
11
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
58
Transcription
25
DNA methylation
24
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
712
February, 2021
270
August, 2021
259
May, 2021
205
February, 2023
197
June, 2019
191
August, 2017
168
July, 2018
160
May, 2022
147
May, 2020
116
October, 2019
98
July, 2019
59
September, 2020
58
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
November, 2018
34
December, 2018
28
May, 2019
24
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
January, 2019
18
November, 2017
17
December, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
77
bigWig
75
bam
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
114
Homo sapiens
Biosample type
77
tissue
37
primary cell
Organ
25
heart
18
brain
18
connective tissue
14
pancreas
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
liver
10
musculature of body
8
blood
8
bodily fluid
5
limb
3
artery
2
pericardium
1
eye
Project
98
AMP
16
T1D
Genome assembly (visualization)
82
hg19
72
GRCh38
Lab
98
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
snATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
subcutaneous adipose tissue
4
1
+ See 24 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 19 more…
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