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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
16
snATAC-seq
9
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
76
DNA binding
35
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
100
fastq
99
bam
85
bigWig
78
bed narrowPeak
78
bigBed narrowPeak
11
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
120
Homo sapiens
Biosample type
61
cell line
45
tissue
14
primary cell
Organ
53
liver
31
pancreas
23
blood
23
bodily fluid
9
spleen
5
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
104
AMP
16
T1D
Genome assembly (visualization)
88
GRCh38
81
hg19
Lab
99
AMP-T2D consortium
16
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
islet of Langerhans
6
4
4
1
spleen
6
1
2
pancreas
4
2
1
liver
4
2
body of pancreas
2
2
+ See 3 more…
primary cell
peripheral blood mononuclear cell
8
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
pancreatic cell
1
See all biosamples
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