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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
23
ATAC-seq
20
total RNA-seq
8
snATAC-seq
3
Hi-C
1
DNase-seq
Assay category
32
DNA accessibility
26
DNA binding
20
Transcription
3
3D chromatin structure
Target of assay
17
histone
17
histone modification
10
broad histone mark
8
control
7
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
67
bam
39
bigWig
38
bed narrowPeak
20
tsv
7
bigBed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
81
Homo sapiens
Biosample type
50
tissue
31
cell line
Organ
86
brain
81
pancreas
69
limb
51
epithelium
47
blood vessel
47
vasculature
42
nerve
30
kidney
26
artery
21
eye
vein
8
blood
8
bodily fluid
8
heart
7
liver
5
connective tissue
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
73
AMP
8
T1D
Genome assembly (visualization)
61
hg19
59
GRCh38
Lab
73
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
vein
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
22
19
4
1
pancreas
4
cell line
EndoC_BH1
13
1
1
1
Panc1
13
1
1
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