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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
120
ChIP-seq
51
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
233
Transcription
120
DNA binding
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
366
bam
346
bigWig
229
tsv
104
bed narrowPeak
99
bigBed narrowPeak
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
396
Homo sapiens
Biosample type
312
tissue
84
primary cell
Organ
165
pancreas
62
vasculature
61
blood vessel
51
epithelium
46
brain
46
heart
20
connective tissue
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
2
pericardium
1
eye
Project
396
AMP
Genome assembly (visualization)
352
hg19
339
GRCh38
Lab
396
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
month_released!
November, 2017
BIOSAMPLE
ASSAY
396 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
thoracic aorta
2
16
1
ascending aorta
1
16
temporal lobe
1
15
1
aorta
13
2
+ See 28 more…
primary cell
pancreatic beta cell
9
kidney epithelial cell
1
5
1
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 35 more…
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