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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
120
ChIP-seq
48
single cell RNA-seq
10
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
172
Transcription
120
DNA binding
2
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
28
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
290
bam
266
bigWig
168
tsv
99
bed narrowPeak
98
bigBed narrowPeak
50
fastq
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
304
Homo sapiens
Biosample type
239
tissue
59
primary cell
6
cell line
Organ
169
pancreas
50
blood vessel
50
vasculature
44
epithelium
28
brain
21
heart
8
connective tissue
7
limb
7
musculature of body
5
artery
5
kidney
Project
304
AMP
Genome assembly (visualization)
267
hg19
266
GRCh38
Lab
294
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
15
inconsistent ontology term
month_released!
November, 2017
BIOSAMPLE
ASSAY
304 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
120
4
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 7 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
kidney epithelial cell
5
pancreatic acinar cell
5
+ See 12 more…
cell line
EndoC_BH1
6
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