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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
100
ATAC-seq
50
ChIP-seq
15
single cell RNA-seq
1
pCHi-C
Assay category
325
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
414
bam
391
bigWig
320
tsv
50
tagAlign
27
bed narrowPeak
17
fastq
Organism
476
Homo sapiens
Biosample type
313
tissue
162
primary cell
1
cell line
Organ
194
liver
157
pancreas
epithelium
2
connective tissue
Project
431
AMP
45
T1D
Genome assembly (visualization)
391
hg19
338
GRCh38
Lab
431
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
March, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
476 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 32 more…
cell line
HepG2
1
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