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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
35
total RNA-seq
31
ChIP-seq
15
RRBS
15
small RNA-seq
12
WGBS
8
Hi-C
6
ATAC-seq
6
single cell RNA-seq
2
FAIRE-seq
Assay category
194
DNA accessibility
56
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
290
bam
285
bigWig
216
bed narrowPeak
211
bigBed narrowPeak
190
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
56
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
3
fastq
Organism
316
Homo sapiens
Biosample type
229
tissue
87
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
34
epithelium
19
vasculature
18
ureter
16
blood vessel
adipose tissue
12
liver
11
pancreas
8
eye
5
artery
2
pericardium
Project
316
AMP
Genome assembly (visualization)
279
GRCh38
268
hg19
Lab
316
AMP-T2D consortium
Audit category:
29
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
316 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
RRBS
small RNA-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 48 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 30 more…
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