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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
12
ChIP-seq
6
DNase-seq
3
small RNA-seq
1
Hi-C
1
RRBS
Assay category
16
Transcription
12
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
34
bam
32
bigWig
16
tsv
15
bed narrowPeak
15
bigBed narrowPeak
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
36
Homo sapiens
Biosample type
25
primary cell
11
tissue
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
36
AMP
Genome assembly (visualization)
32
hg19
31
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
organ_slims!
skeleton
vasculature
BIOSAMPLE
ASSAY
36 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
cardiac atrium fibroblast
1
+ See 4 more…
tissue
omental fat pad
4
1
1
subcutaneous adipose tissue
4
1
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