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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
112
ChIP-seq
106
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
255
Transcription
112
DNA binding
108
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
119
histone
119
histone modification
61
narrow histone mark
broad histone mark
49
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
427
bam
384
bigWig
254
tsv
73
bed narrowPeak
50
tagAlign
41
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
511
Homo sapiens
Biosample type
329
tissue
181
primary cell
1
cell line
Organ
204
liver
40
vasculature
39
blood vessel
39
heart
31
brain
18
connective tissue
16
epithelium
14
kidney
13
musculature of body
12
adipose tissue
8
artery
8
limb
8
pancreas
2
pericardium
1
eye
Project
466
AMP
45
T1D
Genome assembly (visualization)
390
hg19
324
GRCh38
Lab
466
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
November, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
511 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
145
50
1
thoracic aorta
2
9
1
ascending aorta
1
8
heart left ventricle
2
2
1
4
right atrium auricular region
2
6
1
+ See 28 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
1
3
1
B cell
2
2
+ See 49 more…
cell line
HepG2
1
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