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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
45
total RNA-seq
25
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
Assay category
135
DNA binding
69
Transcription
27
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
104
histone
104
histone modification
68
broad histone mark
36
narrow histone mark
29
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
217
bam
196
bigWig
116
bed narrowPeak
105
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
17
fastq
14
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
266
Homo sapiens
Biosample type
230
tissue
36
primary cell
Organ
62
brain
62
vasculature
61
blood vessel
46
heart
30
kidney
20
connective tissue
18
epithelium
17
musculature of body
14
adipose tissue
13
pancreas
12
limb
10
liver
8
artery
2
pericardium
1
eye
1
spleen
Project
266
AMP
Genome assembly (visualization)
202
hg19
201
GRCh38
Lab
251
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
brain
15
1
kidney
11
1
3
1
+ See 30 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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