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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
48
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
1
DNase-seq
Assay category
120
DNA binding
69
Transcription
27
DNA methylation
10
DNA accessibility
8
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
31
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
208
bam
187
bigWig
106
bed narrowPeak
100
bigBed narrowPeak
69
tsv
23
bed bedMethyl
23
bigBed bedMethyl
5
bed bed3+
4
hdf5
1
bed broadPeak
1
bigBed broadPeak
Organism
244
Homo sapiens
Biosample type
196
tissue
42
primary cell
6
cell line
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
24
connective tissue
24
epithelium
18
pancreas
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
2
pericardium
1
eye
Project
244
AMP
Genome assembly (visualization)
194
hg19
181
GRCh38
Lab
234
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
11
inconsistent ontology term
month_released!
May, 2022
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
MeRIP-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 28 more…
primary cell
kidney epithelial cell
5
1
1
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
cell line
EndoC_BH1
6
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