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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
70
total RNA-seq
28
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
167
DNA binding
92
Transcription
30
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
136
histone
136
histone modification
85
broad histone mark
51
narrow histone mark
29
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
289
bam
268
bigWig
162
bed narrowPeak
119
bigBed narrowPeak
91
tsv
90
fastq
23
bed bedMethyl
23
bigBed bedMethyl
14
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
1
csv
Organism
324
Homo sapiens
Biosample type
215
tissue
109
primary cell
Organ
85
pancreas
79
epithelium
62
brain
62
vasculature
61
blood vessel
46
heart
19
connective tissue
17
musculature of body
16
kidney
13
adipose tissue
12
limb
10
liver
8
artery
2
pericardium
1
eye
1
spleen
Project
324
AMP
Genome assembly (visualization)
273
hg19
261
GRCh38
Lab
323
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
36
missing controlled_by
BIOSAMPLE
ASSAY
324 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
brain
15
1
aorta
13
2
+ See 29 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 26 more…
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