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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ChIP-seq
234
total RNA-seq
106
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
456
DNA binding
255
Transcription
108
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
244
transcription factor
115
histone
115
histone modification
97
control
66
recombinant protein
65
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
757
bam
679
bigWig
347
bed narrowPeak
324
fastq
314
bigBed narrowPeak
254
tsv
128
tagAlign
70
bed broadPeak
64
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
tar
Organism
855
Homo sapiens
Biosample type
352
tissue
316
cell line
187
primary cell
Organ
519
liver
109
brain
25
heart
19
epithelium
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
810
AMP
45
T1D
Genome assembly (visualization)
632
hg19
566
GRCh38
Lab
810
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2019
BIOSAMPLE
ASSAY
855 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
50
145
1
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 31 more…
cell line
HepG2
315
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 49 more…
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