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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ATAC-seq
71
total RNA-seq
53
WGBS
40
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
129
Transcription
118
DNA accessibility
68
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
106
bam
105
bigWig
65
tsv
45
bed narrowPeak
24
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
323
Homo sapiens
Biosample type
165
primary cell
158
tissue
Organ
110
pancreas
93
epithelium
50
liver
25
heart
25
kidney
19
connective tissue
18
brain
13
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
5
limb
3
artery
2
pericardium
1
eye
Project
189
AMP
134
HPAP
Genome assembly (visualization)
131
hg19
91
GRCh38
Lab
134
Klaus Kaestner, Upenn
111
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
November, 2020
BIOSAMPLE
ASSAY
323 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 24 more…
tissue
liver
20
22
1
islet of Langerhans
18
6
1
kidney
11
3
1
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
+ See 27 more…
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