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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
70
ChIP-seq
60
WGBS
57
total RNA-seq
38
single cell RNA-seq
22
snATAC-seq
15
small RNA-seq
14
RRBS
8
DNase-seq
7
Hi-C
3
FAIRE-seq
Assay category
116
DNA accessibility
110
Transcription
74
DNA methylation
70
DNA binding
7
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
176
bam
167
bigWig
134
zippedFastqFolder
117
bed narrowPeak
111
fastq
74
bigBed narrowPeak
49
tsv
29
bed bedMethyl
29
bigBed bedMethyl
12
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
txt
3
hdf5
1
csv
Organism
377
Homo sapiens
Biosample type
158
primary cell
158
tissue
61
cell line
Organ
117
pancreas
103
liver
93
epithelium
25
heart
20
brain
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
243
AMP
134
HPAP
Genome assembly (visualization)
182
hg19
141
GRCh38
Lab
179
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
DNase-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 18 more…
tissue
liver
20
4
22
1
2
islet of Langerhans
18
6
1
heart left ventricle
2
4
2
1
spleen
6
2
1
body of pancreas
2
2
2
2
+ See 25 more…
cell line
HepG2
45
1
GM12878
15
See all biosamples
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