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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
39
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
400
DNA binding
60
Transcription
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
242
transcription factor
86
histone
86
histone modification
72
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
463
bam
406
bigWig
318
fastq
316
bed narrowPeak
310
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
60
tsv
17
bed bedMethyl
17
bigBed bedMethyl
3
tar
2
bed bed3+
2
hdf5
Organism
495
Homo sapiens
Biosample type
315
cell line
159
tissue
21
primary cell
Organ
325
liver
109
brain
25
heart
epithelium
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
495
AMP
Genome assembly (visualization)
353
hg19
350
GRCh38
Lab
495
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
January, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
495 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 31 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 10 more…
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