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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
ChIP-seq
15
small RNA-seq
14
RRBS
13
ATAC-seq
12
WGBS
7
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
26
DNA methylation
15
DNA accessibility
15
DNA binding
7
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
81
bigWig
80
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
18
bed narrowPeak
16
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed broadPeak
3
bed bed3+
3
hdf5
Organism
112
Homo sapiens
Biosample type
89
tissue
23
primary cell
Organ
34
brain
25
heart
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
112
AMP
Genome assembly (visualization)
85
hg19
76
GRCh38
Lab
111
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
December, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
112 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
right lobe of liver
2
2
1
gastrocnemius medialis
4
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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