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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
46
total RNA-seq
18
small RNA-seq
15
RRBS
14
ATAC-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
89
DNA binding
67
Transcription
27
DNA methylation
16
DNA accessibility
8
3D chromatin structure
Target of assay
42
histone
42
histone modification
35
control
29
broad histone mark
15
transcription factor
13
narrow histone mark
11
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
April, 2019
76
October, 2018
73
September, 2018
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
173
bam
146
bigWig
77
fastq
67
tsv
64
bed narrowPeak
53
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
14
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
207
Homo sapiens
Biosample type
174
tissue
33
primary cell
Organ
64
pancreas
42
connective tissue
36
adipose tissue
34
brain
25
heart
15
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
207
AMP
Genome assembly (visualization)
151
hg19
140
GRCh38
Lab
206
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
April, 2019
March, 2020
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
4
omental fat pad
11
4
1
1
subcutaneous adipose tissue
12
4
1
brain
15
1
endocrine pancreas
16
+ See 28 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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