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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
47
ChIP-seq
28
ATAC-seq
16
small RNA-seq
14
RRBS
11
WGBS
4
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
88
Transcription
47
DNA binding
30
DNA accessibility
25
DNA methylation
4
3D chromatin structure
Target of assay
44
histone
44
histone modification
27
broad histone mark
17
narrow histone mark
6
control
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
166
bigWig
164
bam
90
fastq
87
tsv
65
bed narrowPeak
22
bigBed narrowPeak
21
bed bedMethyl
21
bigBed bedMethyl
14
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
1
csv
Organism
194
Homo sapiens
Biosample type
101
primary cell
93
tissue
Organ
83
pancreas
74
epithelium
34
brain
25
heart
19
connective tissue
13
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
194
AMP
Genome assembly (visualization)
171
hg19
160
GRCh38
Lab
193
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
36
missing controlled_by
month_released!
December, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
194 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 24 more…
tissue
brain
15
1
heart left ventricle
2
2
1
4
body of pancreas
2
4
2
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 24 more…
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