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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
47
ChIP-seq
28
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
92
Transcription
47
DNA binding
30
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
44
histone
44
histone modification
27
broad histone mark
17
narrow histone mark
6
control
Date released
715
February, 2021
411
August, 2017
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
171
bigWig
169
bam
91
tsv
90
fastq
65
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
22
bigBed narrowPeak
14
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
1
csv
Organism
204
Homo sapiens
Biosample type
104
primary cell
100
tissue
Organ
83
pancreas
74
epithelium
34
brain
25
heart
19
connective tissue
13
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
204
AMP
Genome assembly (visualization)
176
hg19
165
GRCh38
Lab
203
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
36
missing controlled_by
month_released!
November, 2017
month_released!!
November, 2017
BIOSAMPLE
ASSAY
204 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 26 more…
tissue
brain
15
1
heart left ventricle
2
2
1
4
body of pancreas
2
4
2
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
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