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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
15
ChIP-seq
14
RRBS
13
ATAC-seq
13
small RNA-seq
11
WGBS
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
25
DNA methylation
15
DNA accessibility
15
DNA binding
4
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
406
November, 2017
399
May, 2021
341
May, 2020
329
February, 2021
328
August, 2017
318
August, 2021
313
October, 2019
204
February, 2023
198
May, 2022
174
June, 2019
168
July, 2018
113
May, 2019
94
December, 2017
87
November, 2018
86
July, 2019
80
April, 2019
73
September, 2018
60
November, 2019
59
September, 2020
58
March, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
6
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
81
bigWig
79
bam
49
tsv
21
bed bedMethyl
21
bigBed bedMethyl
18
bed narrowPeak
16
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
108
Homo sapiens
Biosample type
82
tissue
26
primary cell
Organ
34
brain
25
heart
19
connective tissue
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
108
AMP
Genome assembly (visualization)
86
hg19
75
GRCh38
Lab
107
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
adipose tissue
musculature of body
BIOSAMPLE
ASSAY
108 results
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Clear Filters
total RNA-seq
ChIP-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
1
2
4
body of pancreas
2
4
2
right lobe of liver
2
2
1
heart
2
1
1
+ See 22 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 17 more…
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