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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
84
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
77
histone
77
histone modification
74
narrow histone mark
10
control
3
broad histone mark
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
96
bam
92
bigWig
76
bed narrowPeak
38
tagAlign
12
tsv
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bigBed narrowPeak
1
tagAlign bed3+
Organism
104
Homo sapiens
Biosample type
97
tissue
7
primary cell
Organ
104
brain
74
limb
59
vasculature
58
blood vessel
48
epithelium
42
nerve
41
kidney
33
heart
29
artery
24
pancreas
22
connective tissue
22
eye
21
vein
17
liver
13
adipose tissue
10
musculature of body
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
Project
104
AMP
Genome assembly (visualization)
95
hg19
90
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
5
1
1
superior frontal gyrus
4
central medial thalamic nucleus
3
cerebellum (Hemisphere)
2
1
frontal cortex
1
1
1
+ See 65 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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