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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
43
single cell RNA-seq
16
small RNA-seq
14
RRBS
9
WGBS
7
ATAC-seq
2
FAIRE-seq
2
Hi-C
Assay category
112
Transcription
23
DNA methylation
9
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
Date released
649
February, 2021
403
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
313
August, 2021
267
October, 2019
198
May, 2022
170
February, 2023
170
June, 2019
168
July, 2018
94
December, 2017
88
November, 2018
87
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
63
May, 2019
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
73
bigWig
68
bam
56
tsv
41
fastq
20
bed bedMethyl
20
bigBed bedMethyl
19
zippedFastqFolder
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
146
Homo sapiens
Biosample type
83
primary cell
63
tissue
Organ
32
epithelium
25
heart
25
pancreas
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
87
AMP
59
HPAP
Genome assembly (visualization)
77
hg19
69
GRCh38
Lab
87
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
month_released!
May, 2023
organ_slims!
blood vessel
musculature of body
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
FAIRE-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 17 more…
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 19 more…
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