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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
total RNA-seq
43
single cell RNA-seq
17
small RNA-seq
13
RRBS
8
Hi-C
5
ATAC-seq
4
WGBS
2
FAIRE-seq
Assay category
110
Transcription
17
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
406
November, 2017
394
May, 2021
341
May, 2020
306
October, 2019
219
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
88
November, 2018
83
July, 2019
81
December, 2017
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
26
February, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
67
bigWig
61
bam
54
tsv
41
fastq
19
zippedFastqFolder
15
bed bedMethyl
15
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
bed narrowPeak
2
bigBed narrowPeak
Organism
142
Homo sapiens
Biosample type
85
primary cell
57
tissue
Organ
32
epithelium
heart
25
pancreas
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
83
AMP
59
HPAP
Genome assembly (visualization)
74
hg19
61
GRCh38
Lab
83
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
heart
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
Hi-C
ATAC-seq
WGBS
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 18 more…
tissue
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 20 more…
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