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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
4
RRBS
2
ATAC-seq
2
Hi-C
2
WGBS
1
FAIRE-seq
1
small RNA-seq
Assay category
11
Transcription
6
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Date released
136
August, 2021
85
June, 2019
79
October, 2019
74
February, 2021
55
May, 2019
47
September, 2023
35
February, 2023
23
April, 2019
22
July, 2019
14
May, 2023
6
March, 2020
3
December, 2019
3
February, 2020
3
November, 2017
Available data
17
bigWig
16
bam
11
tsv
5
bed bedMethyl
5
bigBed bedMethyl
3
bed narrowPeak
2
bed bed3+
2
hdf5
1
bigBed narrowPeak
Organism
22
Homo sapiens
Biosample type
11
primary cell
11
tissue
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
0
pituitary gland
Project
22
AMP
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
22 results
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total RNA-seq
RRBS
ATAC-seq
Hi-C
WGBS
FAIRE-seq
small RNA-seq
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
brain microvascular endothelial cell
1
endothelial cell of coronary artery
1
+ See 3 more…
tissue
thoracic aorta
2
1
aorta
2
kidney
1
1
metanephros
1
1
ascending aorta
1
+ See 1 more…
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