Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 44total RNA-seq
  • 18small RNA-seq
  • 15RRBS
  • 12WGBS
  • 8Hi-C
  • 6ATAC-seq
  • 3single cell RNA-seq
  • 2FAIRE-seq
Assay category
  • 65Transcription
  • 27DNA methylation
  • 83D chromatin structure
  • 8DNA accessibility
Target of assay
  • 3control
Date released
  • 715February, 2021
  • 411August, 2017
  • 406November, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 85bigWig
  • 82bam
  • 65tsv
  • 23bed bedMethyl
  • 23bigBed bedMethyl
  • 7bed narrowPeak
  • 4bed bed3+
  • 4hdf5
  • 2bigBed narrowPeak
Organism
  • 108Homo sapiens
Biosample type
  • 77tissue
  • 31primary cell
Organ
  • 25heart
  • 18brain
  • 18connective tissue
  • 13epithelium
  • 12adipose tissue
  • 12vasculature
  • 11blood vessel
  • 11kidney
  • 10liver
  • 10musculature of body
  • 6pancreas
  • 5limb
  • 3artery
  • 2pericardium
  • 1eye
Project
  • 108AMP
Genome assembly (visualization)
  • 91hg19
  • 79GRCh38
Lab
  • 108AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
type!!!!
  • Embedding
BIOSAMPLE
ASSAY

108 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle2142
omental fat pad41
right lobe of liver221
subcutaneous adipose tissue41
body of pancreas22
gastrocnemius medialis4
heart211
frontal cortex111
liver21
right atrium auricular region21
thoracic aorta21
aorta2
diencephalon11
heart right ventricle2
kidney11
metanephros11
occipital lobe11
parietal lobe11
skeletal muscle tissue11
temporal lobe11
ascending aorta1
brain1
cerebellum1
cerebellum (Hemisphere)1
coronary artery1
islet of Langerhans1
muscle of leg1
pancreas1
pericardium1
posterior cingulate cortex1
right cardiac atrium1
primary cell
cerebellar granule cell2
epithelial cell of proximal tubule11
kidney epithelial cell11
mesenchymal stem cell of adipose11
renal cortical epithelial cell11
skeletal muscle satellite cell11
Purkinje cell1
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
cardiac atrium fibroblast1
cardiac fibroblast1
cardiac muscle cell1
cardiac ventricle fibroblast1
choroid plexus epithelial cell1
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
glomerular endothelial cell1
hepatocyte1
mesangial cell1
pericardium fibroblast1
retinal pigment epithelial cell1
skeletal muscle cell1
skeletal muscle myoblast1
smooth muscle cell of the coronary artery1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego