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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
4
ATAC-seq
3
single cell RNA-seq
1
Hi-C
Assay category
406
DNA binding
4
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
396
bam
337
bigWig
328
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
64
bigBed broadPeak
3
tar
3
tsv
1
bedpe
1
hic
Organism
414
Homo sapiens
Biosample type
315
cell line
87
tissue
12
primary cell
Organ
315
liver
91
brain
7
epithelium
6
pancreas
6
vasculature
3
blood vessel
Project
414
AMP
Genome assembly (visualization)
287
hg19
285
GRCh38
Lab
409
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
414 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
pancreatic ductal cell
1
+ See 1 more…
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