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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
3
single cell RNA-seq
Assay category
318
DNA binding
3
Transcription
Target of assay
244
transcription factor
88
histone
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
329
February, 2021
318
November, 2017
314
May, 2020
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
198
June, 2019
187
August, 2017
168
July, 2018
117
October, 2019
96
July, 2019
87
November, 2018
63
December, 2017
60
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
November, 2020
11
September, 2017
10
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
320
bam
309
fastq
262
bigWig
239
bed narrowPeak
239
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
3
tsv
Organism
321
Homo sapiens
Biosample type
300
cell line
12
tissue
9
primary cell
Organ
300
liver
18
brain
5
epithelium
4
vasculature
2
blood vessel
1
pancreas
Project
321
AMP
Genome assembly (visualization)
260
hg19
210
GRCh38
Lab
321
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
target.investigated_as!
histone modification
nucleotide modification
BIOSAMPLE
ASSAY
321 results
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Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG2
300
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
pancreatic ductal cell
1
+ See 1 more…
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