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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
20
total RNA-seq
9
ChIP-seq
3
single cell RNA-seq
2
Hi-C
Assay category
25
DNA accessibility
23
Transcription
9
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
368
November, 2017
335
May, 2021
329
February, 2021
314
May, 2020
307
August, 2021
278
August, 2017
206
June, 2019
204
February, 2023
200
May, 2022
172
October, 2019
168
July, 2018
96
July, 2019
87
November, 2018
86
May, 2019
78
December, 2017
60
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
56
November, 2019
49
April, 2018
47
September, 2023
42
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
57
bam
32
bed narrowPeak
30
bigWig
23
tsv
3
fastq
2
bedpe bed3+
2
hic
Organism
59
Homo sapiens
Biosample type
39
tissue
12
cell line
5
in vitro differentiated cells
3
primary cell
Organ
52
pancreas
13
epithelium
adipose tissue
1
connective tissue
Project
59
AMP
Genome assembly (visualization)
57
hg19
55
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
organ_slims!
adipose tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
cell line
EndoC_BH1
1
1
9
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
pancreatic ductal cell
1
unclassified exocrine cell
1
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