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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
183
DNase-seq
100
ATAC-seq
78
ChIP-seq
1
pCHi-C
Assay category
283
DNA accessibility
190
Transcription
78
DNA binding
Target of assay
45
histone
45
histone modification
37
narrow histone mark
30
control
8
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
715
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
293
October, 2019
211
June, 2019
200
May, 2022
173
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
494
bam
464
bigWig
231
bed narrowPeak
204
bigBed narrowPeak
189
tsv
183
bed bed3+
183
bed broadPeak
183
bigBed broadPeak
50
tagAlign
Organism
552
Homo sapiens
Biosample type
353
tissue
198
primary cell
1
cell line
Organ
196
liver
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
507
AMP
45
T1D
Genome assembly (visualization)
441
hg19
411
GRCh38
Lab
507
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
month_released!
November, 2019
organ_slims!
eye
BIOSAMPLE
ASSAY
552 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 45 more…
cell line
HepG2
1
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