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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
12
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
198
DNA accessibility
12
DNA binding
4
Transcription
Target of assay
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
258
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
60
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
199
bam
191
bed narrowPeak
191
bigBed narrowPeak
191
bigWig
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
Organism
214
Homo sapiens
Biosample type
178
tissue
36
primary cell
Organ
94
kidney
35
musculature of body
33
heart
32
limb
30
brain
18
epithelium
18
ureter
11
connective tissue
7
vasculature
6
eye
5
blood vessel
4
pancreas
2
adipose tissue
2
artery
2
liver
Project
214
AMP
Genome assembly (visualization)
203
GRCh38
169
hg19
Lab
200
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
10
inconsistent ontology term
month_released!
September, 2017
organ_slims!
thymus
target.investigated_as!
histone
BIOSAMPLE
ASSAY
214 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
tissue
kidney
13
11
3
heart
18
muscle of arm
17
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
3
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
retinal pigment epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 17 more…
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